If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ), 'gf_id' => 'HOM05D000756', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000756' ), 'data_identifier' => 'HOM05D000756', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000756', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39950' => 'bna', 'A02p26190' => 'bna', 'A03p17750' => 'bna', 'A03p24200' => 'bna', 'A03p61050' => 'bna', 'A04p00300' => 'bna', 'A04p35240' => 'bna', 'A05p14080' => 'bna', 'A07p26210' => 'bna', 'A09p13660' => 'bna', 'A09p27580' => 'bna', 'A09p55920' => 'bna', 'A09p69440' => 'bna', 'Aa31LG10G16920' => 'aar', 'Aa31LG1G29540' => 'aar', 'Aa31LG2G790' => 'aar', 'Aa31LG5G5360' => 'aar', 'Aa31LG7G12210' => 'aar', 'Aa31LG9G10730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1680' => 'aag', 'Actinidia00737' => 'ach', 'Actinidia14553' => 'ach', 'Actinidia21103' => 'ach', 'Actinidia22285' => 'ach', 'Actinidia27386' => 'ach', 'Actinidia33755' => 'ach', 'Actinidia33756' => 'ach', 'Actinidia35964' => 'ach', 'Ah.02g116610' => 'amhyb', 'Ah.07g201710' => 'amhyb', 'Ah.08g212930' => 'amhyb', 'Ah.12g057100' => 'amhyb', 'Ah.12g060730' => 'amhyb', 'AL2G11760' => 'aly', 'AL4G16210' => 'aly', 'AL4G26830' => 'aly', 'AL4G42030' => 'aly', 'AL4G47740' => 'aly', 'AL5G45900' => 'aly', 'AL6G46180' => 'aly', 'AL762U10010' => 'aly', 'AL7G20100' => 'aly', 'Aqoxy2G03256' => 'aox', 'Aqoxy7G00346' => 'aox', 'Aqoxy7G03353' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2R4QUJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.99FZNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5UPI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4YDA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVQU0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1AKIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZK65C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFU5K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3A43G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SK03LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU3TWM' => 'arhy', 'AT1G63460' => 'ath', 'AT2G25080' => 'ath', 'AT2G31570' => 'ath', 'AT2G43350' => 'ath', 'AT2G48150' => 'ath', 'AT3G63080' => 'ath', 'AT4G11600' => 'ath', 'AT4G31870' => 'ath', 'ATR0618G103' => 'atr', 'ATR0626G358' => 'atr', 'ATR0680G045' => 'atr', 'ATR0680G251' => 'atr', 'ATR0739G031' => 'atr', 'ATR0743G123' => 'atr', 'Atru.chr3.1558' => 'acertr', 'Atru.chr3.1579' => 'acertr', 'Atru.chr5.1368' => 'acertr', 'Atru.chr5.1428' => 'acertr', 'Atru.chr6.3388' => 'acertr', 'Atru.chr6.3391' => 'acertr', 'Atru.chr7.2554' => 'acertr', 'Atru.chr9.2237' => 'acertr', 'Atru.chr9.2247' => 'acertr', 'AUR62002269' => 'cqu', 'AUR62002981' => 'cqu', 'AUR62005465' => 'cqu', 'AUR62007787' => 'cqu', 'AUR62010584' => 'cqu', 'AUR62010585' => 'cqu', 'AUR62010667' => 'cqu', 'AUR62015425' => 'cqu', 'AUR62017225' => 'cqu', 'AUR62017227' => 'cqu', 'AUR62024797' => 'cqu', 'AUR62032425' => 'cqu', 'AUR62033705' => 'cqu', 'AUR62033706' => 'cqu', 'AUR62035236' => 'cqu', 'AUR62036788' => 'cqu', 'BcaB01g01668' => 'bca', 'BcaB01g03391' => 'bca', 'BcaB01g04032' => 'bca', 'BcaB02g08740' => 'bca', 'BcaB02g10400' => 'bca', 'BcaB05g23819' => 'bca', 'BcaB08g35145' => 'bca', 'BcaB08g35146' => 'bca', 'BcaC01g05237' => 'bca', 'BcaC01g05940' => 'bca', 'BcaC02g10342' => 'bca', 'BcaC02g11264' => 'bca', 'BcaC02g12567' => 'bca', 'BcaC03g16341' => 'bca', 'BcaC04g21156' => 'bca', 'BcaC04g21157' => 'bca', 'BcaC07g40891' => 'bca', 'BcaC08g45259' => 'bca', 'BcaC08g45269' => 'bca', 'BolC2t10182H' => 'bol', 'BolC3t14441H' => 'bol', 'BolC4t23391H' => 'bol', 'BolC4t24545H' => 'bol', 'BolC6t38026H' => 'bol', 'BolC7t46341H' => 'bol', 'BolC8t51461H' => 'bol', 'BolC8t52934H' => 'bol', 'BolC9t53007H' => 'bol', 'BolC9t54544H' => 'bol', 'BolC9t56333H' => 'bol', 'BolSC55t61217H' => 'bol', 'BraA02t07618Z' => 'bra', 'BraA03t11039Z' => 'bra', 'BraA03t11629Z' => 'bra', 'BraA03t15145Z' => 'bra', 'BraA04t15749Z' => 'bra', 'BraA04t18957Z' => 'bra', 'BraA05t18994Z' => 'bra', 'BraA05t20333Z' => 'bra', 'BraA07t30266Z' => 'bra', 'BraA09t37019Z' => 'bra', 'BraA09t38324Z' => 'bra', 'BraA09t40993Z' => 'bra', 'C02p41660' => 'bna', 'C03p20820' => 'bna', 'C03p28840' => 'bna', 'C04p18330' => 'bna', 'C04p30130' => 'bna', 'C06p28590' => 'bna', 'C07p58940' => 'bna', 'C08p38890' => 'bna', 'C08p54250' => 'bna', 'C09p00730' => 'bna', 'C09p16330' => 'bna', 'C09p34880' => 'bna', 'CAN.G1682.18' => 'can', 'CAN.G26.14' => 'can', 'CAN.G26.15' => 'can', 'CAN.G273.17' => 'can', 'CAN.G559.5' => 'can', 'CAN.G609.2' => 'can', 'CAN.G65.187' => 'can', 'CAN.G774.11' => 'can', 'CANSAT21G0153' => 'cansat', 'CANSAT21G2216' => 'cansat', 'CANSAT25G0026' => 'cansat', 'CANSAT78G1976' => 'cansat', 'CARHR047900' => 'chi', 'CARHR116630' => 'chi', 'CARHR125200' => 'chi', 'CARHR138430' => 'chi', 'CARHR143540' => 'chi', 'CARHR173380' => 'chi', 'CARHR239790' => 'chi', 'CARHR254810' => 'chi', 'CARHR258340' => 'chi', 'Carub.0002s0141' => 'cru', 'Carub.0004s0466' => 'cru', 'Carub.0004s1287' => 'cru', 'Carub.0004s2581' => 'cru', 'Carub.0004s3085' => 'cru', 'Carub.0005s2973' => 'cru', 'Carub.0006s3070' => 'cru', 'Carub.0007s0868' => 'cru', 'Ca_09772_v3' => 'car', 'Ca_17270_v3' => 'car', 'Ca_17541_v3' => 'car', 'CBR_g29495' => 'cbr', 'CBR_g78796' => 'cbr', 'CBR_g871' => 'cbr', 'Cc00_g03790' => 'ccan', 'Cc01_g19740' => 'ccan', 'Cc08_g07250' => 'ccan', 'Cc08_g14600' => 'ccan', 'Cc08_g14610' => 'ccan', 'Cc08_g14620' => 'ccan', 'CDE06G0247' => 'cde', 'CDE09G0308' => 'cde', 'CDE09G0737' => 'cde', 'CDE11G0091' => 'cde', 'CDE12G0515' => 'cde', 'Cfa006109' => 'cfa', 'Cfa006110' => 'cfa', 'Cfa012167' => 'cfa', 'Cfa012169' => 'cfa', 'Cfa012170' => 'cfa', 'Cfa013032' => 'cfa', 'Cfa015767' => 'cfa', 'Cfa026263' => 'cfa', 'Ciclev10009304m.g' => 'ccl', 'Ciclev10022130m.g' => 'ccl', 'Ciclev10022293m.g' => 'ccl', 'Ciclev10022566m.g' => 'ccl', 'Ciclev10022569m.g' => 'ccl', 'CiPaw.01G102200' => 'cil', 'CiPaw.07G094100' => 'cil', 'CiPaw.07G230900' => 'cil', 'CiPaw.08G005400' => 'cil', 'CiPaw.11G136300' => 'cil', 'CiPaw.11G136400' => 'cil', 'CiPaw.12G094000' => 'cil', 'ClCG01G002810' => 'cla', 'ClCG05G016180' => 'cla', 'ClCG07G000040' => 'cla', 'ClCG07G015550' => 'cla', 'ClCG09G006900' => 'cla', 'COL.COLO4_14421' => 'col', 'COL.COLO4_18961' => 'col', 'COL.COLO4_34447' => 'col', 'COL.COLO4_34450' => 'col', 'COL.COLO4_34451' => 'col', 'Cpa.g.c32791' => 'cpa', 'Cpa.g.sc148.23' => 'cpa', 'Cpa.g.sc71.15' => 'cpa', 'Cpa.g.sc74.21' => 'cpa', 'Cpa.g.sc74.22' => 'cpa', 'Cpa.g.sc837.1' => 'cpa', 'Cre02.g078300' => 'cre', 'Cre03.g197750' => 'cre', 'Cre08.g358525' => 'cre', 'Cre10.g440850' => 'cre', 'Cre10.g458450' => 'cre', 'CsaV3_4G003180' => 'csa', 'CsaV3_4G036450' => 'csa', 'CsaV3_5G002890' => 'csa', 'CsaV3_5G002900' => 'csa', 'CsaV3_6G036890' => 'csa', 'CsaV3_7G028610' => 'csa', 'CSS0001123' => 'camsi', 'CSS0018912' => 'camsi', 'CSS0018981' => 'camsi', 'CSS0023348' => 'camsi', 'CSS0023923' => 'camsi', 'CSS0028427' => 'camsi', 'CSS0030694' => 'camsi', 'CSS0044067' => 'camsi', 'DCAR_000608' => 'dca', 'DCAR_001333' => 'dca', 'DCAR_002751' => 'dca', 'DCAR_004642' => 'dca', 'DCAR_004643' => 'dca', 'DCAR_006745' => 'dca', 'DCAR_008403' => 'dca', 'DCAR_009708' => 'dca', 'DCAR_012460' => 'dca', 'DCAR_023833' => 'dca', 'DCAR_024916' => 'dca', 'DCAR_024917' => 'dca', 'Dinv11254' => 'din', 'Dinv22713' => 'din', 'Dinv37649' => 'din', 'Dinv38951' => 'din', 'Dinv38952' => 'din', 'Duzib068G1113' => 'dzi', 'Duzib068G1253' => 'dzi', 'Duzib084G0015' => 'dzi', 'Duzib084G1452' => 'dzi', 'Duzib093G0284' => 'dzi', 'Duzib168G1876' => 'dzi', 'Duzib187G1980' => 'dzi', 'ECA233G0077' => 'eca', 'ECA240G0482' => 'eca', 'ECA240G1785' => 'eca', 'ECA240G4369' => 'eca', 'ECA246G0410' => 'eca', 'ECA247G1309' => 'eca', 'ECA248G2439' => 'eca', 'EL10Ac2g02489' => 'bvu', 'EL10Ac3g05576' => 'bvu', 'EL10Ac5g12188' => 'bvu', 'EL10Ac5g13081' => 'bvu', 'EL10Ac6g13987' => 'bvu', 'EL10Ac6g14417' => 'bvu', 'EL10Ac7g17201' => 'bvu', 'Eucgr.A00055' => 'egr', 'Eucgr.A00257' => 'egr', 'Eucgr.C02602' => 'egr', 'Eucgr.D01856' => 'egr', 'Eucgr.D01857' => 'egr', 'Eucgr.E00579' => 'egr', 'Eucgr.H01518' => 'egr', 'Eucgr.K03389' => 'egr', 'FAN04G2421' => 'fan', 'FAN07G0647' => 'fan', 'FAN08G1430' => 'fan', 'FAN08G1456' => 'fan', 'FAN13G0684' => 'fan', 'FAN13G3214' => 'fan', 'FAN15G2831' => 'fan', 'FAN17G0005' => 'fan', 'FAN17G2109' => 'fan', 'FAN17G2785' => 'fan', 'FAN18G1880' => 'fan', 'FAN18G2842' => 'fan', 'FAN20G2079' => 'fan', 'FAN20G2856' => 'fan', 'FAN20G3024' => 'fan', 'FAN24G2896' => 'fan', 'FAN27G0268' => 'fan', 'FvH4_2g23900' => 'fve', 'FvH4_2g41210' => 'fve', 'FvH4_5g02130' => 'fve', 'FvH4_5g02140' => 'fve', 'FvH4_5g02170' => 'fve', 'FvH4_5g02171' => 'fve', 'FvH4_6g25700' => 'fve', 'Glyma.01G219400' => 'gma', 'Glyma.01G219502' => 'gma', 'Glyma.02G149100' => 'gma', 'Glyma.03G151500' => 'gma', 'Glyma.05G207100' => 'gma', 'Glyma.05G207200' => 'gma', 'Glyma.05G240100' => 'gma', 'Glyma.08G013800' => 'gma', 'Glyma.08G013900' => 'gma', 'Glyma.08G047200' => 'gma', 'Glyma.10G024600' => 'gma', 'Glyma.11G024000' => 'gma', 'Glyma.11G024100' => 'gma', 'Glyma.14G101200' => 'gma', 'Glyma.14G101300' => 'gma', 'Glyma.17G223900' => 'gma', 'Glyma.19G154100' => 'gma', 'Gohir.A07G033400' => 'ghi', 'Gohir.A08G069600' => 'ghi', 'Gohir.A08G074000' => 'ghi', 'Gohir.A08G182000' => 'ghi', 'Gohir.A08G185400' => 'ghi', 'Gohir.A09G168600' => 'ghi', 'Gohir.A12G227700' => 'ghi', 'Gohir.A12G227900' => 'ghi', 'Gohir.D07G037000' => 'ghi', 'Gohir.D08G078300' => 'ghi', 'Gohir.D08G083200' => 'ghi', 'Gohir.D08G200600' => 'ghi', 'Gohir.D08G203500' => 'ghi', 'Gohir.D09G164460' => 'ghi', 'Gohir.D12G230200' => 'ghi', 'Gohir.D12G230400' => 'ghi', 'Gorai.001G038600' => 'gra', 'Gorai.004G083200' => 'gra', 'Gorai.004G087300' => 'gra', 'Gorai.004G211400' => 'gra', 'Gorai.004G215500' => 'gra', 'Gorai.006G186100' => 'gra', 'Gorai.008G246400' => 'gra', 'Gorai.008G246600' => 'gra', 'GSVIVG01010737001' => 'vvi', 'GSVIVG01011101001' => 'vvi', 'GSVIVG01019765001' => 'vvi', 'GSVIVG01019766001' => 'vvi', 'GSVIVG01035981001' => 'vvi', 'HanXRQChr01g0002361' => 'han', 'HanXRQChr03g0082611' => 'han', 'HanXRQChr03g0086571' => 'han', 'HanXRQChr03g0086581' => 'han', 'HanXRQChr06g0165811' => 'han', 'HanXRQChr07g0186121' => 'han', 'HanXRQChr07g0189821' => 'han', 'HanXRQChr09g0254291' => 'han', 'HanXRQChr10g0282911' => 'han', 'HanXRQChr13g0416471' => 'han', 'Haze_00735' => 'cav', 'Haze_04740' => 'cav', 'Haze_08857' => 'cav', 'Haze_08866' => 'cav', 'Haze_08867' => 'cav', 'Haze_21392' => 'cav', 'Haze_26604' => 'cav', 'Haze_26800' => 'cav', 'Haze_27510' => 'cav', 'Hma1.2p1_0495F.1_g165660' => 'hma', 'Hma1.2p1_0534F.1_g173740' => 'hma', 'Hma1.2p1_0628F.1_g191940' => 'hma', 'Hma1.2p1_0871F.1_g230980' => 'hma', 'Hma1.2p1_0896F.1_g233890' => 'hma', 'Hma1.2p1_0896F.1_g233920' => 'hma', 'Hma1.2p1_1788F.1_g302420' => 'hma', 'HPP92_000385' => 'vpl', 'HPP92_017466' => 'vpl', 'HPP92_022565' => 'vpl', 'HPP92_026755' => 'vpl', 'Hund02981' => 'sun', 'Hund11479' => 'sun', 'Hund11998' => 'sun', 'Hund14784' => 'sun', 'Hund14789' => 'sun', 'Lalb_Chr02g0142871' => 'lal', 'Lalb_Chr02g0154651' => 'lal', 'Lalb_Chr05g0222121' => 'lal', 'Lalb_Chr05g0224831' => 'lal', 'Lalb_Chr05g0224841' => 'lal', 'Lalb_Chr09g0330791' => 'lal', 'Lalb_Chr09g0333361' => 'lal', 'Lalb_Chr16g0377111' => 'lal', 'Lalb_Chr16g0388461' => 'lal', 'Lalb_Chr20g0107761' => 'lal', 'Lalb_Chr21g0306541' => 'lal', 'Lalb_Chr25g0290261' => 'lal', 'Lj1A45T36' => 'lonja', 'Lj1g0023769' => 'lja', 'Lj2A1177G38' => 'lonja', 'Lj2A190G47' => 'lonja', 'Lj3A230G7' => 'lonja', 'Lj4g0001199' => 'lja', 'Lj4g0003689' => 'lja', 'Lj4g0020251' => 'lja', 'Lj5g0016583' => 'lja', 'Lj5g0018561' => 'lja', 'Lj7C736T6' => 'lonja', 'Lj8A229G67' => 'lonja', 'Lj8A232T67' => 'lonja', 'Lju41A26T45' => 'lonja', 'Lsat_1_v5_gn_3_7561' => 'lsa', 'Lsat_1_v5_gn_5_187421' => 'lsa', 'Lsat_1_v5_gn_5_62040' => 'lsa', 'Lsat_1_v5_gn_6_55160' => 'lsa', 'Lsat_1_v5_gn_6_6400' => 'lsa', 'Lsat_1_v5_gn_6_87200' => 'lsa', 'Lsat_1_v5_gn_6_87220' => 'lsa', 'Lsat_1_v5_gn_8_19361' => 'lsa', 'Lsat_1_v5_gn_9_21800' => 'lsa', 'Manes.01G062400' => 'mes', 'Manes.01G209675' => 'mes', 'Manes.02G022520' => 'mes', 'Manes.02G022600' => 'mes', 'Manes.03G007700' => 'mes', 'Manes.05G073801' => 'mes', 'Manes.11G117500' => 'mes', 'Manes.16G130700' => 'mes', 'Mapoly0023s0153' => 'mpo', 'Mapoly0080s0085' => 'mpo', 'MBI08_g00246_MAGBIO' => 'mbi', 'MBI08_g20681_MAGBIO' => 'mbi', 'MBI12_g43389_MAGBIO' => 'mbi', 'MBI14_g08686_MAGBIO' => 'mbi', 'MBI15_g00936_MAGBIO' => 'mbi', 'MBI17_g12004_MAGBIO' => 'mbi', 'MBI17_g38202_MAGBIO' => 'mbi', 'MBI18_g19073_MAGBIO' => 'mbi', 'MBI18_g19076_MAGBIO' => 'mbi', 'MBI18_g40942_MAGBIO' => 'mbi', 'MBI18_g47274_MAGBIO' => 'mbi', 'MBI18_g47276_MAGBIO' => 'mbi', 'MCO01G711' => 'mco', 'MCO09G450' => 'mco', 'MCO10G050' => 'mco', 'MCO11G134' => 'mco', 'MCO16G318' => 'mco', 'MD03G1268500' => 'mdo', 'MD04G1034400' => 'mdo', 'MD06G1081300' => 'mdo', 'MD06G1081400' => 'mdo', 'MD06G1081500' => 'mdo', 'MD06G1081600' => 'mdo', 'MD08G1055100' => 'mdo', 'MD11G1289300' => 'mdo', 'MD12G1149900' => 'mdo', 'MD14G1027000' => 'mdo', 'MD14G1103200' => 'mdo', 'MD14G1103300' => 'mdo', 'MD14G1103400' => 'mdo', 'MD15G1042100' => 'mdo', 'Medtr1g014210' => 'mtr', 'Medtr1g072570' => 'mtr', 'Medtr5g010340' => 'mtr', 'Medtr7g094600' => 'mtr', 'Medtr8g098400' => 'mtr', 'Medtr8g098410' => 'mtr', 'Medtr8g105630' => 'mtr', 'MELO3C005666.2' => 'cme', 'MELO3C005667.2' => 'cme', 'MELO3C014348.2' => 'cme', 'MELO3C016951.2' => 'cme', 'MELO3C017729.2' => 'cme', 'Migut.A00695' => 'egut', 'Migut.A00774' => 'egut', 'Migut.D00267' => 'egut', 'Migut.E01101' => 'egut', 'Migut.E01102' => 'egut', 'Migut.E01452' => 'egut', 'Migut.N02156' => 'egut', 'MSTRG.11991' => 'ama', 'MSTRG.1629' => 'ama', 'MSTRG.17436' => 'ama', 'MSTRG.1872' => 'ama', 'MSTRG.1873' => 'ama', 'MSTRG.1875' => 'ama', 'MSTRG.21571' => 'ama', 'MSTRG.25644' => 'ama', 'Nitab4.5_0000264g0150' => 'nta', 'Nitab4.5_0000580g0260' => 'nta', 'Nitab4.5_0000759g0020' => 'nta', 'Nitab4.5_0001362g0110' => 'nta', 'Nitab4.5_0002368g0050' => 'nta', 'Nitab4.5_0002776g0050' => 'nta', 'Nitab4.5_0003441g0020' => 'nta', 'Nitab4.5_0004579g0060' => 'nta', 'Nitab4.5_0005149g0030' => 'nta', 'Nitab4.5_0006772g0030' => 'nta', 'Nitab4.5_0007001g0040' => 'nta', 'Nitab4.5_0007737g0030' => 'nta', 'Nitab4.5_0010775g0020' => 'nta', 'Nitab4.5_0015659g0010' => 'nta', 'Nn1g01490' => 'nnu', 'Nn1g01907' => 'nnu', 'Nn1g02151' => 'nnu', 'Nn6g33476' => 'nnu', 'Nn8g39993' => 'nnu', 'Oeu032514.1' => 'oeu', 'Oeu036979.4' => 'oeu', 'Oeu059479.1' => 'oeu', 'Oeu059588.1' => 'oeu', 'Os02g0664000' => 'osa', 'Os03g0358100' => 'osa', 'Os04g0556300' => 'osa', 'Os04g0683850' => 'osa', 'Os06g0185900' => 'osa', 'Os11g0284900' => 'osa', 'Peaxi162Scf00045g01946' => 'pax', 'Peaxi162Scf00045g01947' => 'pax', 'Peaxi162Scf00119g00624' => 'pax', 'Peaxi162Scf00375g00710' => 'pax', 'Peaxi162Scf00570g00213' => 'pax', 'Peaxi162Scf00700g00026' => 'pax', 'Peaxi162Scf00700g00034' => 'pax', 'Peaxi162Scf00783g00341' => 'pax', 'PGR031G0219' => 'pgr', 'PGR031G1020' => 'pgr', 'PGR042G2414' => 'pgr', 'PGR044G0251' => 'pgr', 'PGR044G2015' => 'pgr', 'PGSC0003DMG400012344' => 'stu', 'PGSC0003DMG400026281' => 'stu', 'PGSC0003DMG401004978' => 'stu', 'PGSC0003DMG402004978' => 'stu', 'Phvul.001G041100' => 'pvu', 'Phvul.001G149000' => 'pvu', 'Phvul.002G157200' => 'pvu', 'Phvul.002G288700' => 'pvu', 'Phvul.002G288800' => 'pvu', 'Phvul.002G322400' => 'pvu', 'Phvul.007G169601' => 'pvu', 'Potri.001G105100' => 'ptr', 'Potri.001G105200' => 'ptr', 'Potri.003G126100' => 'ptr', 'Potri.006G265400' => 'ptr', 'Potri.007G126600' => 'ptr', 'Potri.014G138800' => 'ptr', 'Potri.018G017500' => 'ptr', 'Pp3c11_1900' => 'ppa', 'Pp3c17_13017' => 'ppa', 'Pp3c17_13420' => 'ppa', 'Pp3c4_27460' => 'ppa', 'Pp3c5_13660' => 'ppa', 'PRCOL_00000776' => 'pco', 'PRCOL_00001164' => 'pco', 'PRCOL_00002535' => 'pco', 'PRCOL_00006002' => 'pco', 'Prupe.1G186500' => 'ppe', 'Prupe.1G395200' => 'ppe', 'Prupe.5G098400' => 'ppe', 'Prupe.5G098500' => 'ppe', 'Prupe.5G098600' => 'ppe', 'Prupe.5G098700' => 'ppe', 'Prupe.8G244300' => 'ppe', 'Psat3g020440' => 'psa', 'Psat3g065600' => 'psa', 'Psat6g026280' => 'psa', 'Psat6g061240' => 'psa', 'Psat7g006120' => 'psa', 'Psat7g006160' => 'psa', 'Psat7g032560' => 'psa', 'Psat7g032600' => 'psa', 'PSO017G2379' => 'pso', 'PSO017G2689' => 'pso', 'PSO063G4863' => 'pso', 'PSO170G0429' => 'pso', 'PSO407G0060' => 'pso', 'PSO478G0814' => 'pso', 'PSO478G2879' => 'pso', 'PSO675G5259' => 'pso', 'PSO782G0416' => 'pso', 'PSO782G2141' => 'pso', 'PSO782G3011' => 'pso', 'QL02p018632' => 'qlo', 'QL02p018704' => 'qlo', 'QL05p056985' => 'qlo', 'QL10p048140' => 'qlo', 'QL12p022426' => 'qlo', 'QL12p033544' => 'qlo', 'QL12p033552' => 'qlo', 'QL12p034230' => 'qlo', 'RcHm_v2.0_Chr4g0400261' => 'rch', 'RcHm_v2.0_Chr4g0408201' => 'rch', 'RcHm_v2.0_Chr6g0245721' => 'rch', 'RcHm_v2.0_Chr6g0291511' => 'rch', 'RcHm_v2.0_Chr6g0299301' => 'rch', 'RcHm_v2.0_Chr7g0197971' => 'rch', 'RcHm_v2.0_Chr7g0197981' => 'rch', 'RcHm_v2.0_Chr7g0198001' => 'rch', 'Rhsim01G0275800' => 'rsi', 'Rhsim02G0212300' => 'rsi', 'Rhsim02G0228400' => 'rsi', 'Rhsim05G0075800' => 'rsi', 'Rhsim07G0091400' => 'rsi', 'Sabra01G0079700' => 'sbr', 'Sabra01G0079800' => 'sbr', 'Sabra03G0089400' => 'sbr', 'Sabra06G0208000' => 'sbr', 'Sabra07G0102700' => 'sbr', 'Sabra14G0104700' => 'sbr', 'SalBow1G5894' => 'sbo', 'SalBow1G6817' => 'sbo', 'SalBow4G1875' => 'sbo', 'Sc01g0009510' => 'sci', 'Sc01g0009520' => 'sci', 'Sc05g0004860' => 'sci', 'Sc09g0010720' => 'sci', 'Sc19g0002670' => 'sci', 'Sc22g0005630' => 'sci', 'Sed0002594' => 'sed', 'Sed0003145' => 'sed', 'Sed0003518' => 'sed', 'Sed0009070' => 'sed', 'Sed0015674' => 'sed', 'Sed0020114' => 'sed', 'Sed0021328' => 'sed', 'Sed0021881' => 'sed', 'Sed0027951' => 'sed', 'SEGI_00222' => 'sgi', 'SEGI_03854' => 'sgi', 'SEGI_04140' => 'sgi', 'SEGI_10635' => 'sgi', 'SEGI_10859' => 'sgi', 'SEGI_11523' => 'sgi', 'SEGI_14929' => 'sgi', 'SEGI_15021' => 'sgi', 'SEGI_15873' => 'sgi', 'SEGI_16912' => 'sgi', 'SEGI_17749' => 'sgi', 'SEGI_20172' => 'sgi', 'SEGI_21054' => 'sgi', 'SEGI_22311' => 'sgi', 'SEGI_22922' => 'sgi', 'SEGI_24553' => 'sgi', 'SEGI_25941' => 'sgi', 'SEGI_31115' => 'sgi', 'SEGI_32925' => 'sgi', 'SEGI_37734' => 'sgi', 'SEGI_41135' => 'sgi', 'SEGI_41168' => 'sgi', 'SGA_v2.0_scaffold1G00452' => 'sas', 'SGA_v2.0_scaffold253G45135' => 'sas', 'SGA_v2.0_scaffold385G50473' => 'sas', 'SGA_v2.0_scaffold385G50474' => 'sas', 'SGA_v2.0_scaffold4G02167' => 'sas', 'SMO134G0294' => 'smo', 'SMO203G0249' => 'smo', 'SMO361G0586' => 'smo', 'SMO367G0053' => 'smo', 'SMO367G1167' => 'smo', 'Solyc06g073460.4' => 'sly', 'Solyc08g006720.4' => 'sly', 'Solyc08g068800.4' => 'sly', 'Solyc08g080940.3' => 'sly', 'Solyc09g064850.3' => 'sly', 'Solyc12g056230.2' => 'sly', 'Solyc12g056240.2' => 'sly', 'Sopen06g029820' => 'spe', 'Sopen08g002660' => 'spe', 'Sopen08g022540' => 'spe', 'Sopen08g029250' => 'spe', 'Sopen09g026550' => 'spe', 'Sopen12g028750' => 'spe', 'Sopen12g028760' => 'spe', 'Sp2g01150' => 'spa', 'Sp4g04090' => 'spa', 'Sp4g14020' => 'spa', 'Sp4g25450' => 'spa', 'Sp4g30060' => 'spa', 'Sp5g00450' => 'spa', 'Sp6g05870' => 'spa', 'Sp7g29680' => 'spa', 'TAR365G0512' => 'tar', 'TAR365G0910' => 'tar', 'TAR375G0087' => 'tar', 'TAR375G0173' => 'tar', 'TAR383G1046' => 'tar', 'TAR629G2303' => 'tar', 'TAR633G0588' => 'tar', 'TAR636G1116' => 'tar', 'TAR636G3100' => 'tar', 'THA.LOC104800901' => 'tha', 'THA.LOC104802226' => 'tha', 'THA.LOC104803619' => 'tha', 'THA.LOC104803642' => 'tha', 'THA.LOC104806387' => 'tha', 'THA.LOC104809390' => 'tha', 'THA.LOC104814454' => 'tha', 'THA.LOC104815195' => 'tha', 'THA.LOC104823053' => 'tha', 'Thecc.01G283100' => 'tca', 'Thecc.03G277400' => 'tca', 'Thecc.03G277500' => 'tca', 'Thecc.05G003400' => 'tca', 'Thecc.09G014700' => 'tca', 'Thhalv10000311m.g' => 'esa', 'Thhalv10001645m.g' => 'esa', 'Thhalv10001660m.g' => 'esa', 'Thhalv10006247m.g' => 'esa', 'Thhalv10017319m.g' => 'esa', 'Thhalv10023725m.g' => 'esa', 'Thhalv10026852m.g' => 'esa', 'Thhalv10028932m.g' => 'esa', 'Thhalv10029228m.g' => 'esa', 'TPR.G12827' => 'tpr', 'TPR.G12964' => 'tpr', 'TPR.G1553' => 'tpr', 'TPR.G18121' => 'tpr', 'TPR.G19249' => 'tpr', 'TPR.G40791' => 'tpr', 'TPR.G7114' => 'tpr', 'TWI15G0915' => 'twi', 'TWI23G0424' => 'twi', 'TWI34G1352' => 'twi', 'TWI63G0039' => 'twi', 'TWI73G0169' => 'twi', 'TWI81G0258' => 'twi', 'TWI81G0646' => 'twi', 'TWI81G0710' => 'twi', 'unitig_0.g2181' => 'ugi', 'unitig_26.g9703' => 'ugi', 'unitig_748.g8102' => 'ugi', 'unitig_749.g13769' => 'ugi', 'vmacro00606' => 'vma', 'vmacro11238' => 'vma', 'vmacro11321' => 'vma', 'vmacro13951' => 'vma', 'vmacro13952' => 'vma', 'vmacro14932' => 'vma', 'VMungo0251G1039' => 'vmu', 'VMungo0251G1131' => 'vmu', 'VMungo0251G2681' => 'vmu', 'VMungo0251G3386' => 'vmu', 'VMungo0251G3608' => 'vmu', 'VMungo0251G3729' => 'vmu', 'VMungo0540G1943' => 'vmu', 'VMungo0647G0027' => 'vmu', 'VMungo0720G0199' => 'vmu', 'VMungo1080G1670' => 'vmu', 'VMungo1215G0220' => 'vmu', 'VMungo1215G2414' => 'vmu', 'VMungo1309G2440' => 'vmu', 'VMungo1383G2223' => 'vmu', 'Zm00001eb016270' => 'zma', 'Zm00001eb074350' => 'zma', 'Zm00001eb186820' => 'zma', 'Zm00001eb278300' => 'zma', 'Zm00001eb394400' => 'zma', 'Zm00001eb429430' => 'zma' ) $gf_id = 'HOM05D000756' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000756' ) $data_identifier = 'HOM05D000756' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 16, 'bca' => (int) 19, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 12, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 5, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 22, 'sas' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429430' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1